The Bioinformatics Analysis Team, or BAT, was formed in September 2008 and is a small and agile research team combining usefully diverse expertise.
Our interests and efforts revolve around horizontal mechanisms of immunity, or disease resistance, or stress response, in humans and plants. This means that by conducting cutting-edge research within both taxonomies we put ourselves in a position to ask more questions and understand more. The different sections of our "cave" should give you a better idea of the why, what, how, and with whom. Enjoy your stay.
quick links
Circoletto | MASiVE | MASiVEdb | MeSHy | PuReD-MCL
news
May 2012 | MASiVEdb on BMC Genomics
The database on Sireviruses from fully-sequenced plant genomes is now published in BMC Genomics.March 2012 | Sireviruses go live on MaizeGDB
Our data on maize Sireviruses from MASiVEdb have been integrated in the genome browser of MaizeGDB.December 2011 | Sireviruses go to PAGXX
We are looking forward to presenting our work on Sireviruses in the Transposable Element workshop of PAGXX.December 2011 | Sireviruses soon to appear on MaizeGDB
We are very happy to be able to contribute our Sireviruses to MaizeGDB.October 2011 | Sireviruses in the maize genome
"The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story." is now published in The Plant Journal.
July 2011 | MASiVEdb: Sireviruses in plant genomes
MASiVEdb is a collective resource of Sirevirus populations in plant genome sequences, aiming to support research into their evolutionary dynamics and impact across the Plant kingdom. As the name suggests, MASiVE is involved.
June 2011 | MASiVE online
The MASiVE algorithm is now improved and ready to study plant DNA sequences for the presence of Sirevirus elements. As always, bare with us while we iron out any problems.June 2011 | PuReD-MCL finally online
PuReD-MCL, a tool for PubMed document clustering published in Bioinformatics in 2008, is now available online, hopefully working ok but still under observation.
May 2011 | MeSHy to be published
MeSHy, the fruit of our collaboration with two Departments of the Aristotle University of Thessaloniki, has been accepted in the Journal of Biomedical Informatics.March 2011 | site upgraded and updated
We have done a lot of work on the site, including on the structure, function, and content.January 2011 | ENosAI: collaborating on blood diseases
The ENosAI collaborative research project between our team, the Hematology Department and HCT Unit of the G. Papanicolaou Hospital, the Department of Haematology of University of Crete School of Medicine, and Bioanalytica has officially started, funded through the GSRT. A website is planned, through which you will be able to follow the project.August 2010 | Circoletto: visualising sequence similarity
Circoletto, a tool based on Circos and able to beautifully visualise sequence similarity has been accepted in Bioinformatics and is now accessible to all (through tools as well).
August 2010 | MASiVE: the spotlight on Sireviruses
MASiVE (Mapping and Analysis of SireVirus Elements), an algorithm able to identify with high accuracy and sensitivity Sirevirus LTR retrotransposons, is now published in Bioinformatics.
June 2010 | case report on acute lymphoblastic leukemia
"Coexistence of different types of biallelic immunoglobulin heavy variable gene replacement events in a case of pediatric B precursor acute lymphoblastic leukemia." - in Leuk Lymphoma.May 2010 | antigen-driven clonal evolution in CLL
"Intraclonal diversification of immunoglobulin light chains in a subset of chronic lymphocytic leukemia alludes to antigen-driven clonal evolution." - in Leukemia.
April 2010 | MeSHy: unexpected knowledge from text
We have submitted MeSHy, and we are making it available through our tools page.February 2010 | computational genomics workshop at INA
Info, poster, registration form.February 2010 | highly conserved motifs in Sirevirus elements
"Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?" - in BMC Genomics.
July 2009 | a different ontogenesis for CLL
"A different ontogenesis for chronic lymphocytic leukemia cases carrying stereotyped antigen receptors: molecular and computational evidence." - in Leukemia.